{ "cells": [ { "cell_type": "markdown", "metadata": {}, "source": [ "This recipe is no longer necessary as all of the functionality described is now a part of scikit-bio!\n", "\n", "You can find information on computing *Faith's PD* and *Weighted/Unweighted UniFrac* in the [diversity section of the scikit-bio docs](http://scikit-bio.org/docs/0.5.0/diversity.html).\n", "\n", "For a thorough analysis of working with microbial diversity, see the [*Studying Biological Diversity* chapter](http://readiab.org/book/latest/3/1) of [*An Introduction to Applied Bioinformatics*](http://readiab.org/).\n" ] } ], "metadata": { "kernelspec": { "display_name": "Python 3", "language": "python", "name": "python3" }, "language_info": { "codemirror_mode": { "name": "ipython", "version": 3 }, "file_extension": ".py", "mimetype": "text/x-python", "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", "version": "3.4.4" } }, "nbformat": 4, "nbformat_minor": 0 }